SOAPify

SOAPify is a support module for helping the user in calculating SOAP fingerprints

SOAPify contains submodules for a basic time analysis of a trajecory of classifications and for calculating the SOAP fingerprints using the soap engine from quippy or dscribe

HDF5er

HDF5er is a submodule with a interface between mda and h5py to store trajectories

engine

This submodule contains the settings and the function to call the SOAP engines

saponify

Submodule that contains the workhorse routines to apply the SOAP calculations

distances

This submodules contaisn a collection of SOAP distances

classify

Submodule to classify trajectories

transitions

Simple submodule for generating trasition matrices from SOAPclassification Author: Daniele Rapetti

analysis

Module that contains various analysis routines

utils

Utilities submodule, cointains unclassified support functions Author: Daniele Rapetti

cli

submodule containing the command line interfaces of SOAPify